Root Mean Square Fluctuation (RMSF) is used to describe the average magnitude of fluctuations in the position of a swarm of particles over time. In a physical sense, both RMSD and RMSF describe the deviation of a particle's target state from a reference state. RMSD and RMSF analysis are collectively referred to as RMS analysis. Now, CD BioSciences provides you with a variety of RMSF analysis of biofilm system service to meet your research needs.

Figure 1. RMSF. (Giordano M, et al. 2012)

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CD BioSciences provides one-stop RMSF analysis of biofilm system service. We offer a variety of methods and software to choose from to meet your research needs.

Specific RMSF Analysis Approaches We Offer

In addition to properties such as energy, structural changes and relaxations can also be used to examine the convergence of simulations toward equilibrium. Usually, this relaxation is only measured using the Euclidean distance from the structure to a reference structure (such as a crystal structure). This distance is called the root mean square deviation (RMSD). However, we also recommend to take another look at the relaxation to the mean structure. To calculate the RMSD relative to the mean structure, the mean structure needs to be obtained first. The mean structure can be obtained when calculating the Root Mean Square Fluctuation (RMSF).

Through the RMSF calculation, we can provide the fluctuation of each atom relative to its average position, which characterizes the average of the change in structure over time, and gives the characterization of the flexibility of various regions of the protein, corresponding to the b-factor (temperature factor) in crystallography ). In general, we expect similar RMSF and temperature factors, which can be used to check whether the simulation results agree with the crystal structure.

Provided by Clients

Please inform us of your specific RMSF analysis of biofilm system service details, and we can provide customized solutions for different projects.

Service Process

Our Features

Deliverables

1. Related experimental results raw data
2. Biofilm RSMF calculation results
3. Stability Assessment Report
4. Experimental report
5. Data analysis
6. Image and result analysis
7. Summary of relevant calculation parameters

Why Choose Us?

CD BioSciences provides professional RMSF analysis services to meet the scientific research needs of customers. CD BioSciences relies on world-class technical expertise, we provide customers with the best quality one-stop RMSF analysis services, including the development of experimental procedures according to different experimental needs. Please feel free to contact us for more detailed information, our scientists will tailor the most reasonable plan for your project.

Reference

1. Giordano M, Ilda D, Andrea C, et al. Binding of an Indenoisoquinoline to the Topoisomerase-DNA Complex Induces Reduction of Linker Mobility and Strengthening of Protein-DNA Interaction. Plos One, 2012, 7(12):e51354.

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