CD BioSciences construct a composite mathematical model of geometrically heterogeneous biofilms for our customers. It consists of discrete components, such as cellular automata for biofilm growth and differential equations for mass transfer, mass conversion, and fluid flow. The specific submodels and the applied solution algorithms have different degrees of inherent natural parallelism. Our algorithms allow for very efficient parallel acceleration. The next step is to incorporate this into the described growth model. Future biofilm studies must emphasize the inclusion of additional and internal biofilm processes. CD BioSciences use computer-aided methods to provide modeling services for geometric heterogeneity in biofilms to help customers complete biofilm related research.

Specific Modeling Approaches We Offer

Biofilms are accumulations of microorganisms on surfaces in aquatic systems that develop in highly irregular patterns. The minimum length scale of the biofilm structure model is several orders of magnitude smaller than the biofilm itself. This allows only small portions of the system to be simulated, making computational resources a limiting factor in the size of the problem.

Our Service Process

• CD BioSciences offers state-of-the-art computational models for forming biofilm morphologies in a hydrodynamic environment and has established them for high performance computing applications.
• CD BioSciences provides data parallelism in the model and solution algorithms.
• Our biofilm models combine different branches of mathematical modeling: discrete cellular automata, continuous kinetic equations, and conservation laws for fluid flow and substrate concentration.

Provided by Customers

Please inform us of your specific modeling services for geometric heterogeneity in biofilms details, and we can provide customized solutions for different projects.

Service Process

Our Features

Deliverables

1. Related experimental results raw data
2. Simulation results
3. Image and result analysis
4. Interaction and movement details
5. Summary of relevant calculation parameters

Why Choose Us?

CD BioSciences is a company that provides professional and comprehensive biofilm services. We have years of experience to meet your specific project needs in using biofilm research to add value to your research projects. CD BioSciences can provide you with personalized solutions to help you thrive every step of the way around your interest in your workflow. For more details on how we can support your project with innovation, please feel free to contact us.

Reference

1. Hanfeng Zhai, et al. Multiscale Computational Modeling of Biofilm. 2022

• Biofilm Computational Construction Service
• Biofilm Molecular Dynamics Simulation Service
• Stability Test of Biofilm System
• RMSF Analysis of Biofilm System
• Gyration Radius Analysis of Biofilm System
• Binding Mode Analysis of Biofilm System
• Secondary Structure Analysis of Biofilm System
• Energy Analysis of Biofilm System
• Hydrophobic Interaction Analysis of Biofilm System
• Free Energy Landscape Analysis of Biofilm System
• Biofilm Conformational Principal Component Analysis
• Biofilm Ramachandran Plots Analysis
• Cluster Analysis of Biofilm System
• SAS Analysis Service of Biofilm System
• Energy Decomposition Analysis of Biofilm System
• Electrostatic Interaction Analysis of Biofilm System
• Biofilm Virtual Screening Service
• Computational Modeling of Early-Stage Biofilm Formation
• Biofilm CGMD Service
• Biofilm DPD Service
• Biofilm DEM Service
• Biofilm SPH Service
• Biofilm XFEM Service
• Other Biofilm MD Serivce
• Biofilm Homology Modeling Serivce
• Gram-negative Bacterial Outer Membrane Construction Service
• Biofilm Formation Simulation Service
• Construction Services for Discrete Difference Models
• Computational Simulation Service for Biofilm Development
• Computational Modeling Service for Synthetic Biofilms
• Biofilm MD Results Analysis Services
• Biofilm Multiscale Computational Modeling Service
• Biofilm Modeling Service